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ESR5 - Neural Coding Representation of Behaviorally Relevant Tactile Features

Develop information theoretic methods, based on the new concept of intersection information, to measure how much tactile information carried by a spiking neural code is used to implement specific behaviors in perceptual-guided tasks.

TAGS   Biological Touch   Prosthetics   Technologies for Touch

Overview

Objectives

Develop information theoretic methods, based on the new concept of intersection information, to measure how much tactile information carried by a spiking neural code is used to implement specific behaviors in perceptual-guided tasks. These methods, which are unique in being able to determine the behavioral relevance of neural codes and not only their sensory information content, will be applied to both neural spike trains and artificial sensors. Building on recent technical advances, we will use the partial information decomposition framework to isolate the the part of the redundant information that stimulus and spiking response share about the appropriate choice that is also a part of stimulus-spikes information. These methods will be specifically adapted to address one of the main sensory coding problems of this project: how best to encode at the sensor/neuron population level, and then use for discrimination tasks, tactile information that is temporally precise at specific times but that needs to be integrated over long time scales for discrimination (e.g. long temporal sequences of tactile stimuli). Following recent progress on this issue on auditory and visual population coding of task relevant signals, we will explore the idea that codes exploiting either correlations across time or correlations across cells can generate long time scales of neural representations that make it easier to both encode past and present information in instantaneous activity, and to facilitate its behavioral readout. This will be achieved by using first machine learning methods to reduce the dimensionality of population time sequences of spikes coupled with correlation shuffling methods to assess population coding and its modulation by correlation.

Expected Results

Provide fundamental mathematical tools that can be used to determine the tactile population codes based on spike timing and used by biological systems for performing specific tasks, and that would be optimal in robots to encode task-relevant tactile information.

Secondments

  • UNIBI

    active sensing for knobs and switches

  • EPFL

    apply information theory on sensory output from prosthetic devices

  • IIT-iCub

    test neural coding on a robotic platform for implementing behavior, and to integrate possible benefits of information theoretic algorithms for task relevant information encoding

Supervisors

  • S. Panzeri

  • R. Haschke

  • S. Micera

  • M. Diamond

  • C. Bartolozzi

Miguel Ángel Casal Santiago

Understanding complex systems such as the brain has been always part of my curiosity. I am particularly interested in computational neuroscience, since during my Bachelor’s degree I got in touch with subjects about neural modeling, neural signals or brain-computer interfaces and researchers addressing brain understanding from this point of view. I think this field can provide us with a new insight of the human brain.

Neutouch for me

Multidisciplinarity is essential nowadays to generate new knowledge and produce new ideas in general. NeuTouch integrates people from many different places and background that will be able to collaborate to take the most from touch understanding and its applications.

Info

  • Research Topics

    Biology and Computational Neuroscience

  • Institution

    Istituto Italiano di Tecnologia — Università degli Studi di Genova

  • Background

    B.Sc. Biomedical Engineering (Universitat Pompeu Fabra, Barcelona, 2014-2018)
    M.Sc. Intelligent Interactive Systems (Universitat Pompeu Fabra, Barcelona, 2018-2019)

Thesis

An information-theoretic approach to understanding the neural coding of relevant tactile features. University of Genova, 2023.

Abstract

Objective: Traditional theories in neuroscience state that tactile afferents present in the glabrous skin of the human hand encode tactile information following a submodality segregation strategy, meaning that each modality (eg. motion, vibration, shape, ... ) is encoded by a different afferent class. Modern theories suggest a submodality convergence instead, in which different afferent classes work together to capture information about the environment through tactile sense. Typically, studies involve electrophysiological recordings of tens of afferents. At the same time, the human hand is filled with around 17.000 afferents. In this thesis, we want to tackle the theoretical gap this poses. Specifically, we aim to address whether the peripheral nervous system relies on population coding to represent tactile information and whether such population coding enables us to disambiguate submodality convergence against the classical segregation. Approach: Understanding the encoding and flow of information in the nervous system is one of the main challenges of modern neuroscience. Neural signals are highly variable and may be non-linear. Moreover, there exist several candidate codes compatible with sensory and behavioral events. For example, they can rely on single cells or populations and also on rate or timing precision. Information-theoretic methods can capture non-linearities while being model independent, statistically robust, and mathematically well-grounded, becoming an ideal candidate to design pipelines for analyzing neural data. Despite information-theoretic methods being powerful for our objective, the vast majority of neural signals we can acquire from living systems makes analyses highly problem-specific. This is so because of the rich variety of biological processes that are involved (continuous, discrete, electrical, chemical, optical, ...). Main results: The first step towards solving the aforementioned challenges was to have a solid methodology we could trust and rely on. Consequently, the first deliverable from this thesis is a toolbox that gathers classical and state-of-the-art information-theoretic approaches and blends them with advanced machine learning tools to process and analyze neural data. Moreover, this toolbox also provides specific guidance on calcium imaging and electrophysiology analyses, encompassing both simulated and experimental data. We then designed an information-theoretic pipeline to analyze large-scale simulations of the tactile afferents that overcomes the current limitations of experimental studies in the field of touch and the peripheral nervous system. We dissected the importance of population coding for the different afferent classes, given their spatiotemporal dynamics. We also demonstrated that different afferent classes encode information simultaneously about very simple features, and that combining classes increases information levels, adding support to the submodality convergence theory. Significance: Fundamental knowledge about touch is essential both to design human-like robots exhibiting naturalistic exploration behavior and prostheses that can properly integrate and provide their user with relevant and useful information to interact with their environment. Demonstrating that the peripheral nervous system relies on heterogeneous population coding can change the designing paradigm of artificial systems, both in terms of which sensors to choose and which algorithms to use, especially in neuromorphic implementations.

Publications

Corniani, G., Casal, M. A., Panzeri, S., & Saal, H. P. (2022). Population coding strategies in human tactile afferents. PLOS Computational Biology, 18(12), e1010763.

Maffulli, R., Casal, M. A., Celotto, M., Zucca, S., Safaai, H., Fellin, T., & Panzeri, S. (2022). NIT: an open-source tool for information theoretic analysis of neural population data. bioRxiv, 2022-12.

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